Publications

Management of Suspected Cases of Feline Immunodeficiency Virus Infection in Eurasian Lynx (Lynx lynx) During an International Translocation Program
Marie-Pierre Ryser-Degiorgis, Iris Marti, Simone R.R. Pisano,
Mirjam Pewsner, Martin Wehrle, Chrstine Breitenmoser-Würsten,
Francesco C. Origgi, Anna Kübber-Heiss, Felix Knauer,
Annika Posautz, Matthias Eberspächer-Schweda, Jon B. Huder, Jürg
Böni, Jakub Kubacki, Claudia Bachofen, Barbara Riond,
Regina HOfmann-Lehmann, Marina L. Meli
Front Vet Sci.2021 Oct 25;8:730874. doi: 10.3389/fvets.2021.730874. eCollection

 

Genome Sequence of Equid Alphaherpesvirus 1 (EHV-1) from a Nasal Swab of Swiss Hose Associated with a Major EHV-1 Outbreak following a Show Jumbing Event in Valencia, Spain
Jakub Kubacki, Julia Lechmann, Cornel Fraefel, Claudia Bachofen
Microbiol Resour Announc. 2021 Aug 26;10(34):e0073221.doi:10.1128/MRA.00732-21

 

Recommendations for the introduction of metagenomic next-generation sequencing in clinical virology, part II: bioinformatic analysis and reporting. 
de Vries JJC, Brown JR, Couto N, Beer M, Le Mercier P, Sidorov I, Papa A, Fischer N, Oude Munnink BB, Rodriquez C, Zaheri M, Sayiner A, Hönemann M, Cataluna AP, Carbo EC, Bachofen C, Kubacki J, Schmitz D, Tsioka K, Matamoros S, Höper D, Hernandez M, Puchhammer-Stöckl E, Lebrand A, Huber M, Simmonds P, Claas ECJ, López-Labrador FX; ESCV Network on Next-Generation Sequencing.
J Clin Virol. 2021 May;138:104812. doi: 10.1016/j.jcv.2021.104812.

 

Metagenomic analysis of fecal and tissue samples from 18 endemic bat species in Switzerland revealed a diverse virus composition including potentially zoonotic viruses. 
Hardmeier I, Aeberhard N, Qi W, Schoenbaechler K, Kraettli H, Hatt JM, Fraefel C, Kubacki J.
PLoS One. 2021 Jun 16;16(6):e0252534.

 

Active equine parvovirus-hepatitis infection is most frequently detected in Austrian horses of advanced age

Marcha Badenhorst, Phebe de Heus, Angelika Auer, Birthe Tegtmeyer, Alexander Stang, Katharina Dimmel, Alexander Tichy, Jakub Kubacki, Claudia Bachofen, Eike Steinmann, Jessika M.V. Cavalleri

Equine Vet J. 2021 Mar 11. doi: 10.1111/evj.13444

 

Complete Genome Sequence of a Rhabdovirus Strain from Culex Mosquitos Collected in Southern Switzerland

Jakub Kubacki, Isabelle Hardmeier, Weihong Qi, Eleonora Flacio, Mauro Tonolla, Cornel Fraefel

American Society for Microbiology Journals 2020

 

Implementation of next-generation sequencing as a diagnostic tool in veterinary virology (PDF, 835 KB)

Kubacki Jakub, Fraefel, Cornel, Bachofen Claudia

Journal of Veterinary Diagnostic Investigation 2020 19-0521.R1

 

Viral Metagenomic Analysis of Aedes albopictus Mosquitos from Southern Switzerland

Jakub Kubacki, Eleonora Flacio, Weihong Qi, Valeria Guidi, Mauro Tonolla and Cornel Fraefel

Viruses 2020, 12(9), 929; https://doi.org/10.3390/v12090929
 

Robert Graage, Helena Saura Martinez, Stefanie Klausmann, Jakub Kubacki, and Dolf Kümmerlen

 British Veterinary Association 2020 http://dx.doi.org/10.1136/vetreccr-2020-001193

 

Complete Genome Sequence of a Boa (Boa constrictor)-Specific Papillomavirus Type 1 Isolate

Jakub Kubacki, Anna Sophie Ramsauer, Claudia Bachofen, Claude Favrot, Alexandra Nicolier, Cornel Fraefel, Kurt Tobler

American Society for Microbiology Journals 2018
https://doi.org/10.1128/MRA.01159-18

 

Detection and Characterization of Okapi (Okapia johnstoni)—specific Papillomavirus type 1 (OjPV1)

Anna Sophie Ramsauer, Jakub Kubacki, Monika Welle, Claudia Bachofen, Cornel Fraefel, Stefan Hoby, Kurt Tobler, Christian Wenker

Veterinary Microbiology Volume 223, September 2018, Pages 113-118

 

Complete Genome Sequences of Two Swiss Hepatitis E Virus Isolates from Human Stool and Raw Pork Sausage

Jakub Kubacki, Cornel Fraefel, Marco Jermini, Petra Giannini, Gladys Martinetti, Paolo Ripellino, Enos Bernasconi, Xaver Sidler, Roger Stephan, Claudia Bachofen

American Society for Microbiology journals 2017 
https://doi.org/10.1128/genomeA.00888-17